<html>
	<head>
		<meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1">
		<title> JDet - Known bugs - Computational Systems Biology Group </title>
		<META NAME="Description" CONTENT="JDet: Interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.">
		<META NAME="Keywords" CONTENT="JDet, Multiple alignment, sequence space, Conserved residues, function related, conservation, Xdet, S3det, CSBG, CNB">
		<LINK rel="icon" href="favicon.ico" />
		<LINK href="css/styles.css" rel="stylesheet" type="text/css">
		<script type="text/javascript">

		  var _gaq = _gaq || [];
		  _gaq.push(['_setAccount', 'UA-25985083-1']);
		  _gaq.push(['_trackPageview']);

		  (function() {
			var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
			ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
			var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
		  })();

		</script>
	</head>
	<body>
		<center><h2><i>JDet</i><br>Known bugs</h2></center>
		<hr>
		<p>
		Currently the following bugs have been detected in JDet.
		<ul>
			<li>
				Drag and drop files doesn't work in OSX.
			</li>
			<li>
				Several error detected in linux with more than one display: Maximization and resizing dimensions are wrong and java3D dependent windows will not load in the secondary display.
			</li>
			
		</ul>
		</p>
		<p>
		Fixed bugs:
		<ul>
			<li>
				Version 1.4.4: When maximizing the alignment window instead of resizing, sequences at the end of the alignment out of the scope of the minimized window are not shown.
			</li>
			<li>
				Version 1.4.3: The bug described for version 1.4.2 is still present when pdb files are loaded directly from pdb site. 
			</li>
			<li>
				Version 1.4.2: Structure alignments are based in the primary sequence of PDB files (SEQRES tag). Since structure information not always matches with the primary sequence, <b>selected residues could differ between alignment and structure view </b>. Please check that residues in your selection are correct while this bug is fixed.  
			</li>

			<li>
				Version 1.4.1: Blast against RSBC webservices is no longer supported by RSBC. Since version 1.4.2 blast is performed against NCBI servers 
			</li>
		</ul>					
		</p>
		<p>

		If you want to report new bugs or be noticed about new versions and fixed bugs please send an email to Juan A. Garcia Martin (<img valign="bottom" src="img/email_jagarcia.png"/>). 
		</p>

		<hr>

		</p>
		<b><a href="http://csbg.cnb.csic.es/JDet">[JDet main page]</a></b>

	</body>
</html>
